• Amino

    Prof. Dr. Mustafa Altınışık Biyokimya Slaytları

    EC 6. Ligases

    EC 6. Ligases
    EC 6.1 Forming Carbon-Oxygen Bonds
    EC 6.1.1 Ligases Forming Aminoacyl-tRNA and Related Compounds

    EC 6.1.1.1 tyrosine—tRNA ligase
    EC 6.1.1.2 tryptophan—tRNA ligase
    EC 6.1.1.3 threonine—tRNA ligase
    EC 6.1.1.4 leucine—tRNA ligase
    EC 6.1.1.5 isoleucine—tRNA ligase
    EC 6.1.1.6 lysine—tRNA ligase
    EC 6.1.1.7 alanine—tRNA ligase
    EC 6.1.1.8 deleted
    EC 6.1.1.9 valine—tRNA ligase
    EC 6.1.1.10 methionine—tRNA ligase
    EC 6.1.1.11 serine—tRNA ligase
    EC 6.1.1.12 aspartate—tRNA ligase
    EC 6.1.1.13 D-alanine-poly(phosphoribitol) ligase
    EC 6.1.1.14 glycine—tRNA ligase
    EC 6.1.1.15 proline—tRNA ligase
    EC 6.1.1.16 cysteine—tRNA ligase
    EC 6.1.1.17 glutamate—tRNA ligase
    EC 6.1.1.18 glutamine—tRNA ligase
    EC 6.1.1.19 arginine—tRNA ligase
    EC 6.1.1.20 phenylalanine—tRNA ligase
    EC 6.1.1.21 histidine—tRNA ligase
    EC 6.1.1.22 asparagine—tRNA ligase
    EC 6.1.1.23 aspartate—tRNAAsn ligase
    EC 6.1.1.24 glutamate—tRNAGln ligase
    EC 6.1.1.25 lysine—tRNAPyl ligase
    EC 6.1.1.26 pyrrolysine—tRNAPyl ligase
    EC 6.1.1.27 O-phosphoserine—tRNA ligase

    EC 6.1.2 Acid—Alcohol Ligases (ester synthases)

    EC 6.1.2.1 D-alanine—(R)-lactate ligase

    EC 6.2 Forming Carbon-Sulfur Bonds

    EC 6.2.1 Acid-Thiol Ligases

    EC 6.2.1.1 acetate—CoA ligase
    EC 6.2.1.2 butyrate—CoA ligase
    EC 6.2.1.3 long-chain-fatty-acid—CoA ligase
    EC 6.2.1.4 succinate—CoA ligase (GDP-forming)
    EC 6.2.1.5 succinate—CoA ligase (ADP-forming)
    EC 6.2.1.6 glutarate—CoA ligase
    EC 6.2.1.7 cholate—CoA ligase
    EC 6.2.1.8 oxalate—CoA ligase
    EC 6.2.1.9 malate—CoA ligase
    EC 6.2.1.10 acid—CoA ligase (GDP-forming)
    EC 6.2.1.11 biotin—CoA ligase
    EC 6.2.1.12 4-coumarate—CoA ligase
    EC 6.2.1.13 acetate—CoA ligase (ADP-forming)
    EC 6.2.1.14 6-carboxyhexanoate—CoA ligase
    EC 6.2.1.15 arachidonate—CoA ligase
    EC 6.2.1.16 acetoacetate—CoA ligase
    EC 6.2.1.17 propionate—CoA ligase
    EC 6.2.1.18 citrate—CoA ligase
    EC 6.2.1.19 long-chain-fatty-acid—luciferin-component ligase
    EC 6.2.1.20 long-chain-fatty-acid—[acyl-carrier-protein] ligase
    EC 6.2.1.21 covered by EC 6.2.1.30
    EC 6.2.1.22 [citrate (pro-3S)-lyase] ligase
    EC 6.2.1.23 dicarboxylate—CoA ligase
    EC 6.2.1.24 phytanate—CoA ligase
    EC 6.2.1.25 benzoate—CoA ligase
    EC 6.2.1.26 o-succinylbenzoate—CoA ligase
    EC 6.2.1.27 4-hydroxybenzoate—CoA ligase
    EC 6.2.1.28 3α,7α-dihydroxy-5β-cholestanate—CoA ligase
    EC 6.2.1.29 deleted now EC 6.2.1.7
    EC 6.2.1.30 phenylacetate—CoA ligase
    EC 6.2.1.31 2-furoate—CoA ligase
    EC 6.2.1.32 anthranilate—CoA ligase
    EC 6.2.1.33 4-chlorobenzoate—CoA ligase
    EC 6.2.1.34 trans-feruloyl-CoA synthase
    EC 6.2.1.35 ACP-SH:acetate ligase
    EC 6.2.1.36 3-hydroxypropionyl-CoA synthase

    EC 6.3 Forming Carbon-Nitrogen Bonds

    EC 6.3.1 Acid-Ammonia (or Amine) Ligases (Amide Synthases)

    EC 6.3.1.1 aspartate—ammonia ligase
    EC 6.3.1.2 glutamate—ammonia ligase
    EC 6.3.1.3 now EC 6.3.4.13
    EC 6.3.1.4 aspartate—ammonia ligase (ADP-forming)
    EC 6.3.1.5 NAD+ synthase
    EC 6.3.1.6 glutamate—ethylamine ligase
    EC 6.3.1.7 4-methyleneglutamate—ammonia ligase
    EC 6.3.1.8 glutathionylspermidine synthase
    EC 6.3.1.9 trypanothione synthase
    EC 6.3.1.10 adenosylcobinamide-phosphate synthase
    EC 6.3.1.11 glutamate—putrescine ligase
    EC 6.3.1.12 D-aspartate ligase)
    EC 6.3.1.13 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-α-D-glucopyranoside ligase
    EC 6.3.1.14 diphthine—ammonia ligase

    EC 6.3.2 Acid—Amino-Acid Ligases (Peptide Synthases)

    EC 6.3.2.1 pantoate—β-alanine ligase
    EC 6.3.2.2 glutamate—cysteine ligase
    EC 6.3.2.3 glutathione synthase
    EC 6.3.2.4 D-alanine—D-alanine ligase
    EC 6.3.2.5 phosphopantothenate—cysteine ligase
    EC 6.3.2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase
    EC 6.3.2.7 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate—L-lysine ligase
    EC 6.3.2.8 UDP-N-acetylmuramate—L-alanine ligase
    EC 6.3.2.9 UDP-N-acetylmuramoylalanine—D-glutamate ligase
    EC 6.3.2.10 UDP-N-acetylmuramoylalanyl-tripeptide—D-alanyl-D-alanine ligase
    EC 6.3.2.11 carnosine synthase
    EC 6.3.2.12 dihydrofolate synthase
    EC 6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate—2,6-diaminopimelate ligase
    EC 6.3.2.14 2,3-dihydroxybenzoate—serine ligase
    EC 6.3.2.15 deleted, due to EC 6.3.2.10
    EC 6.3.2.16 D-alanine—alanyl-poly(glycerolphosphate) ligase
    EC 6.3.2.17 tetrahydrofolate synthase
    EC 6.3.2.18 γ-glutamylhistamine synthase
    EC 6.3.2.19 .................More Read....

    EC 5. Isomerases

    EC 5. Isomerases
    EC 5.1 Racemases and Epimerases
    EC 5.1.1 Acting on Amino Acids and Derivatives

    EC 5.1.1.1 alanine racemase
    EC 5.1.1.2 methionine racemase
    EC 5.1.1.3 glutamate racemase
    EC 5.1.1.4 proline racemase
    EC 5.1.1.5 lysine racemase
    EC 5.1.1.6 threonine racemase
    EC 5.1.1.7 diaminopimelate epimerase
    EC 5.1.1.8 4-hydroxyproline epimerase
    EC 5.1.1.9 arginine racemase
    EC 5.1.1.10 amino-acid racemase
    EC 5.1.1.11 phenylalanine racemase (ATP-hydrolysing)
    EC 5.1.1.12 ornithine racemase
    EC 5.1.1.13 aspartate racemase
    EC 5.1.1.14 nocardicin-A epimerase
    EC 5.1.1.15 2-aminohexano-6-lactam racemase
    EC 5.1.1.16 protein-serine epimerase
    EC 5.1.1.17 isopenicillin-N epimerase
    EC 5.1.1.18 serine racemase

    EC 5.1.2 Acting on Hydroxy Acids and Derivatives

    EC 5.1.2.1 lactate racemase
    EC 5.1.2.2 mandelate racemase
    EC 5.1.2.3 3-hydroxybutyryl-CoA epimerase
    EC 5.1.2.4 acetoin racemase
    EC 5.1.2.5 tartrate epimerase
    EC 5.1.2.6 isocitrate epimerase

    EC 5.1.3 Acting on Carbohydrates and Derivatives

    EC 5.1.3.1 ribulose-phosphate 3-epimerase
    EC 5.1.3.2 UDP-glucose 4-epimerase
    EC 5.1.3.3 aldose 1-epimerase
    EC 5.1.3.4 L-ribulose-5-phosphate 4-epimerase
    EC 5.1.3.5 UDP-arabinose 4-epimerase
    EC 5.1.3.6 UDP-glucuronate 4-epimerase
    EC 5.1.3.7 UDP-N-acetylglucosamine 4-epimerase
    EC 5.1.3.8 N-acylglucosamine 2-epimerase
    EC 5.1.3.9 N-acylglucosamine-6-phosphate 2-epimerase
    EC 5.1.3.10 CDP-paratose 2-epimerase
    EC 5.1.3.11 cellobiose epimerase
    EC 5.1.3.12 UDP-glucuronate 5′-epimerase
    EC 5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
    EC 5.1.3.14 UDP-N-acetylglucosamine 2-epimerase
    EC 5.1.3.15 glucose-6-phosphate 1-epimerase
    EC 5.1.3.16 UDP-glucosamine 4-epimerase
    EC 5.1.3.17 heparosan-N-sulfate-glucuronate 5-epimerase
    EC 5.1.3.18 GDP-mannose 3,5-epimerase
    EC 5.1.3.19 chondroitin-glucuronate 5-epimerase
    EC 5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
    EC 5.1.3.21 maltose epimerase
    EC 5.1.3.22 L-ribulose-5-phosphate 3-epimerase
    EC 5.1.3.23 UDP-2,3-diacetamido-2,3-dideoxyglucuronic acid 2-epimerase

    EC 5.1.99 Acting on Other Compounds

    EC 5.1.99.1 methylmalonyl-CoA epimerase
    EC 5.1.99.2 16-hydroxysteroid epimerase
    EC 5.1.99.3 allantoin racemase
    EC 5.1.99.4 α-methylacyl-CoA racemase
    EC 5.1.99.5 hydantoin racemase

    EC 5.2 cis-trans-Isomerases

    EC 5.2.1.1 maleate isomerase
    EC 5.2.1.2 maleylacetoacetate isomerase
    EC 5.2.1.3 retinal isomerase
    EC 5.2.1.4 maleylpyruvate isomerase
    EC 5.2.1.5 linoleate isomerase
    EC 5.2.1.6 furylfuramide isomerase
    EC 5.2.1.7 retinol isomerase
    EC 5.2.1.8 peptidylprolyl isomerase
    EC 5.2.1.9 farnesol 2-isomerase
    EC 5.2.1.10 2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase
    EC 5.2.1.11 deleted entry

    EC 5.3 Intramolecular Oxidoreductases

    EC 5.3.1 Interconverting Aldoses and Ketoses

    EC 5.3.1.1 triose-phosphate isomerase
    EC 5.3.1.2 deleted
    EC 5.3.1.3 arabinose isomerase
    EC 5.3.1.4 L-arabinose isomerase
    EC 5.3.1.5 xylose isomerase
    EC 5.3.1.6 ribose-5-phosphate isomerase
    EC 5.3.1.7 mannose isomerase
    EC 5.3.1.8 mannose-6-phosphate isomerase
    EC 5.3.1.9 glucose-6-phosphate isomerase
    EC 5.3.1.10 now EC 3.5.99.6
    EC 5.3.1.11 deleted
    EC 5.3.1.12 glucuronate isomerase
    EC 5.3.1.13 arabinose-5-phosphate isomerase
    EC 5.3.1.14 L-rhamnose isomerase
    EC 5.3.1.15 D-lyxose ketol-isomerase
    EC 5.3.1.16 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
    EC 5.3.1.17 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
    EC 5.3.1.18 deleted
    EC 5.3.1.19 now EC 2.6.1.16
    EC 5.3.1.20 ribose isomerase
    EC 5.3.1.21 corticosteroid side-chain-isomerase
    EC 5.3.1.22 hydroxypyruvate isomerase
    EC 5.3.1.23 5-methylthioribose-1-phosphate isomerase
    EC 5.3.1.24 phosphoribosylanthranilate isomerase
    EC 5.3.1.25 L-fucose isomerase
    EC 5.3.1.26 galactose-6-phosphate isomerase
    EC 5.3.1.27 6-phospho-3-hexuloisomerase
    EC 5.3.1.28 D-sedoheptulose 7-phosphate isomerase

    EC 5.3.2 Interconverting Keto- and Enol-Groups

    EC 5.3.2.1 phenylpyruvate tautomerase
    EC 5.3.2.2 oxaloacetate tautomerase

    EC 5.3.3 Transposing C=C Bonds

    EC 5.3.3.1 steroid Δ-isomerase
    EC 5.3.3.2 isopentenyl-diphosphate Δ-isomerase
    EC 5.3.3.3 vinylacetyl-CoA Δ-isomerase
    EC 5.3.3.4 muconolactone Δ-isomerase
    EC 5.3.3.5 cholestenol Δ-isomerase
    EC 5.3.3.6 methylitaconate Δ-isomerase
    EC 5.3.3.7 aconitate Δ-isomerase
    EC 5.3.3.8 dodecenoyl-CoA Δ-isomerase
    EC 5.3.3.9 prostaglandin-A1 .................More Read....

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